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#Matlab r2013a image analysis toolbox install#

Maybe you need to install Java 1.7 (see e.g.

Problem: Undefined variable "pottslab" or class "2Potts" Solution: Increase Java heap space in the Matlab preferences (MATLAB - General - Java heap memory) For best performance, increase Java heap space in the Matlab preferences (MATLAB - General - Java heap memory).Run the script "installPottslab.m", it should set all necessary paths.Installation for Matlab (all features usable) Quickstart: Call "java -jar pottslab-standalone.jar input output.png gamma" where gamma is a positive real number, e.g.Usage Instructions Standalone usage from command line (only image plain image segmentation supported) Szorkovszky et al., Assortative interactions revealed by sorting of animal groups, Animal Behaviour, 2018 Nord et al., Catch bond drives stator mechanosensitivity in the bacterial flagellar motor, Proceedings of the National Academy of Sciences, 2017 Top: Noisy signal Bottom: Minimizer of Potts functional (ground truth in red) Approximative strategies for severely blurred data.Fast and exact solver for L1 Potts model.L1 Potts model is robust to noise and to moderately blurred data.Left: Shepp-Logan phantom Center: Filtered backprojection from 7 angular projections Right: Joint reconstruction and segmentation using the Potts model from 7 angular projections Denoising of jump-sparse/piecewise-constant signals, or step detection/changepoint detection Label-free: Labels need NOT be chosen a-priori

convolution, Radon transform, MRI, PET, MPI: only implementation of proximal mapping reuqired

Applicable to many imaging operators, e.g.

Joint image reconstruction and segmentation Breger et al., Supervised learning and dimension reduction techniques for quantification of retinal fluid in optical coherence tomography images, Eye (2017). Texture segmentation using highdimensional curvelet-based feature vectors Left: A natural image Right: Result using Potts model

Label-free: No label discretization required.

Linear complexity in number of color channels.

Supports segmentation of vector-valued images (e.g.

See also the Pick of the Week on - Application examples Segmentation of vector-valued images Jump-sparse signals and images using the Potts model (also known as "piecewise constant Mumford-Shah model" or "l0 gradient model").Īpplications include denoising of piecewise constant signals, step detection and Pottslab is a Matlab/Java toolbox for the reconstruction of